Protein ZmC3H42
ZmC3H42 is a protein in the C3H family.
Information
TF Name: ZmC3H42
Species: Maize
TF Family: C3H
Gene Name(Synonym): C3H42
Uniprot ID: K7VP35
Subgenome: 2

Protein ZmC3H42

ZmC3H42 is a protein in the C3H family.

Overview of domains present in v5 transcripts
PF00642PF06220
Zm00001eb333750_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d008356DAPseq no logo sequence fimo position
Zm00001d008356DAPseq no logo sequence fimo position
Zm00001d008356ChIPseq no logo sequence fimo position
Zm00001d008356PChIPseq no logo sequence fimo position

Interactions where ZmC3H42 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmC3H42 is the target  
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There are 55 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb333750_T001 from maize genome v5

Amino Acid Sequence
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MPLGKYYCDYCDKQFQDTPAARKRHLQGVQHQRARALWYDSIRHQDQHGGASSLLLPDGTLAKGICHHFVRTGACKYGDS
CRYFHPKPNGVNPALAAPGLGSGPAPMVQQSDIIGNQPNFVVYQGVDINSSSGKILGGHASWGNLPPSLQPPPEGGYPPL
PFIDWG

MPLGKYYCDYCDKQFQDTPAARKRHLQGVQHQRARALWYDSIRHQDQHGGASSLLLPDGTLAKGICHHFVRTGACKYGDS
CRYFHPKPNGVNPALAAPGLGSGPAPMVQQSDIIGNQPNFVVYQGVDINSSSGKILGGHASWGNLPPSLQPPPEGGYPPL
PFIDWG

MPLGKYYCDYCDKQFQDTPAARKRHLQGVQHQRARALWYDSIRHQDQHGGASSLLLPDGTLAKGICHHFVRTGACKYGDS
CRYFHPKPNGVNPALAAPGLGSGPAPMVQQSDIIGNQPNFVVYQGVDINSSSGKILGGHASWGNLPPSLQPPPEGGYPPL
PFIDWG

MPLGKYYCDYCDKQFQDTPAARKRHLQGVQHQRARALWYDSIRHQDQHGGASSLLLPDGTLAKGICHHFVRTGACKYGDS
CRYFHPKPNGVNPALAAPGLGSGPAPMVQQSDIIGNQPNFVVYQGVDINSSSGKILGGHASWGNLPPSLQPPPEGGYPPL
PFIDWG

MPLGKYYCDYCDKQFQDTPAARKRHLQGVQHQRARALWYDSIRHQDQHGGASSLLLPDGTLAKGICHHFVRTGACKYGDS
CRYFHPKPNGVNPALAAPGLGSGPAPMVQQSDIIGNQPNFVVYQGVDINSSSGKILGGHASWGNLPPSLQPPPEGGYPPL
PFIDWG

MPLGKYYCDYCDKQFQDTPAARKRHLQGVQHQRARALWYDSIRHQDQHGGASSLLLPDGTLAKGICHHFVRTGACKYGDS
CRYFHPKPNGVNPALAAPGLGSGPAPMVQQSDIIGNQPNFVVYQGVDINSSSGKILGGHASWGNLPPSLQPPPEGGYPPL
PFIDWG

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF06220
PF00642
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Nucleotide Sequence
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GTTGTGCCTCTATGGTTTTGGAGGG...

GRMZM2G024655_T01 from maize genome v3


Related TFome: pUT6112

Amino Acid Sequence
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MPLGKYYCDYCDKQFQDTPAARKRHLQGVQHQRARALWYDSIRHQDQHGGASSLLLPDGTLAKGICHHFVRTGACKYGDS
CRYFHPKPNGVNPALAAPGLGSGPAPMVQQSDIIGNQPNFVVYQGVDINSSSGKILGGHASWGNLPPSLQPPPEGGYPPL
PFIDWG

Nucleotide Sequence
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AACACCCAACACGATGCCCTTGGGG...

Zm00001d008356_T001 from maize genome v4

Amino Acid Sequence
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MPLGKYYCDYCDKQFQDTPAARKRHLQGVQHQRARALWYDSIRHQDQHGGASSLLLPDGTLAKGICHHFVRTGLGLGLHP
WCSSLILLGTNPILLYTRE

Nucleotide Sequence
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GTAGAGACCAGAGCTGCCAACACCC...

Zm00001d008356_T002 from maize genome v4

Amino Acid Sequence
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MPLGKYYCDYCDKQFQDTPAARKRHLQGVQHQRARALWYDSIRHQDQHGGASSLLLPDGTLAKGICHHFVRTGLGLGLHP
WCSSLILLGTNPILLYTRE

Nucleotide Sequence
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GTAGAGACCAGAGCTGCCAACACCC...

Zm00001d008356_T003 from maize genome v4

Amino Acid Sequence
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MPLGKYYCDYCDKQFQDTPAARKRHLQGVQHQRARALWYDSIRHQDQHGGASSLLLPDGTLAKGICHHFVRTGACKYGDS
CRYFHPKPNGVNPALAAPGKAFFSYSYSTWIGWDRKNL

Nucleotide Sequence
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GTAGAGACCAGAGCTGCCAACACCC...

Zm00001d008356_T004 from maize genome v4

Amino Acid Sequence
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MVQQSDIIGNQPNFVVYQGVDINSSSGKILGGHASWGNLPPSLQPPPEGGYPPLPFIDWG

Nucleotide Sequence
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ATTCGCCACCAAGGTCAGCCGGGAA...

Zm00001d008356_T005 from maize genome v4

Amino Acid Sequence
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MPLGKYYCDYCDKQFQDTPAARKRHLQGVQHQRARALWYDSIRHQDQHGGASSLLLPDGTLAKGICHHFVRTGACKYGDS
CRYFHPKPNGVNPALAAPGLGSGPAPMVQQSDIIGNQPNFVVYQGVDINSSSGKILGGHASWGNLPPSLQPPPEGGYPPL
PFIDWG

Nucleotide Sequence
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ACCCAACACGATGCCCTTGGGGAAG...

Zm00001d008356_T006 from maize genome v4

Amino Acid Sequence
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MVQQSDIIGNQPNFVVYQGVDINSSSERIVIYDKLDAYHILTSVSCHAMM

Nucleotide Sequence
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GTGGAAATTCTCAGTAGAGACCAGA...

Zm00001d008356_T007 from maize genome v4

Amino Acid Sequence
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MVQQSDIIGNQPNFVVYQGVDINSSSERIVIYDKLDAYHILTSVSCHAMM

Nucleotide Sequence
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GCCCTTGGGGAAGTACTACTGCGAC...


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